Nir Friedman

Nir Friedman

Professor
The Rachel and Selim Benin School of Computer Science and Engineering
The Alexander Silberman Institute of Life Sciences
The Hebrew University of Jerusalem
Jerusalem 91904
Israel
+972-2-549-4557 (Office)

+972-2-658-4707 (Admin)
+972-2-658-4295 (Wet Lab)

nir@cs.huji.ac.il

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Books


Peer-Reviewed Journal Publications

2013

  • De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis with B.J. Haas, A. Papanicolaou, M. Yassour, M.G. Grabherr, P.D. Blood, J. Bowden, M.B. Couger, D. Eccles, B. Li, M. Lieber, MD. Macmanes, M. Ott, J. Orvis, N. Pochet, F. Strozzi, N. Weeks, R. Westerman, T. William, C.N. Dewey, R. Henschel, R.D. Leduc, and A. Regev.
    Nature Protocols 8(8):1494-512, 2013.
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Invited Papers and Book Chapters

2013

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2002


Peer-Reviewed Book Chapters

  • Statistical methods for analyzing gene expression data for cancer research with N. Kaminski.
    H. W. Mewes, H. Seidel, and B. Weiss, eds. Ernest Schering Foundation Workshop: Volume 38: Bioinformatics and Genome Analysis, 2002.
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  • Learning probabilistic relational models with L. Getoor, D. Koller, and A. Pfeffer.
    S. Dvzeroski and N. Lavrac, eds. Relational Data Mining, Springer-Verlag, pp. 307-337, 2001.
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  • Learning Bayesian networks with local structure with M. Goldszmidt.
    M. I. Jordan ed. Learning and Inference in Graphical Models, 1998.
    PostScript PDF
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Peer-Reviewed Conference Proceedings

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Other Publications