Nir Friedman

Professor
School of Computer Science and Engineering
Alexander Silberman Institute of Life Sciences
The Hebrew University of Jerusalem
Jerusalem 91904
Israel
+972-2-549-4557 (Office)

+972-2-658-4707 (Admin)
+972-2-658-4295 (Wet Lab)

nir@cs.huji.ac.il

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Disserations Under My Supervision

2011

  • Transcription Regulation Models and Their Applications to Human Disease Research by N. Novershtern.
    Ph.D. dissertation, Heberw University, 2011.
    PDF
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2010

  • Reasoning about Structured Stochastic Systems in Continuous-Time by T. El-Hay.
    Ph.D. dissertation, Heberw University, 2010.
    PDF
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  • Understanding Protein-Protein Interaction Networks by A. Jaimovich.
    Ph.D. dissertation, Heberw University, 2010.
    PDF
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  • Histone Modifications in Transcriptional Regulation by A. Novogrodski.
    M.Sc. dissertation, Heberw University, 2010.
    PDF
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  • Exploring Transcription Regulation through Cell-to-cell Variability by R. Rinott.
    M.Sc. dissertation, Heberw University, 2010.
    PDF
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2009

  • Mean Field Variational Approximation for Continuous-Time Bayesian Networks by I. Cohn.
    M.Sc. dissertation, Heberw University, 2009.
    PDF
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2008

  • From DNA Sequence to Chromatin Dynamics: Computational Analysis of Transcriptional Regulation by T. Kaplan.
    Ph.D. dissertation, Heberw University, 2008.
    PDF
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  • Modeling Evolution Using Probabilistic Models by M. Ninio.
    Ph.D. dissertation, Heberw University, 2008.
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2007

  • Analysis of DNA Motifs Based on a Novel Motif Comparison Method by N. Habib.
    M.Sc. dissertation, Heberw University, 2007.
    PDF
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  • Learning Symmetric Relational Markov Random Fields by O. Meshi.
    M.Sc. dissertation, Heberw University, 2007.
    PDF
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  • Nucleosome Positioning from Tiling Microarray Data by M. Yassour.
    M.Sc. dissertation, Heberw University, 2007.
    PDF
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2005

  • Unified Models for Regulatory Mechanisms by Y. Barash.
    Ph.D. dissertation, Heberw University, 2005.
    PDF
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  • Learning Hidden Variables in Probabilistic Graphical Models by G. Elidan.
    Ph.D. dissertation, Heberw University, 2005.
    PDF
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2004

  • Toward an Integrated Protein-Protein Interaction Map by A. Jaimovich.
    M.Sc. dissertation, Heberw University, 2004.
    PDF
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  • Probabilistic Modeling of Gene Regulatory Networks From Data by I. Nachman.
    Ph.D. dissertation, Heberw University, 2004.
    PDF
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  • Discriminative Learning of Composite Transcriptional Regulatory Networks by T. Naveh.
    M.Sc. dissertation, Heberw University, 2004.
    PostScript PDF
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  • Computational Aspects in Gene Expression Analysis by N. Shefi.
    M.Sc. dissertation, Heberw University, 2004.
    PDF
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2003

  • From Gene Expression to Molecular Pathways by D. Pe'er.
    Ph.D. dissertation, Heberw University, 2003.
    PostScript PDF
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2001

  • Efficient Methods for Exact and Approximate Inference in Graphical Models by T. El-Hay.
    M.Sc. dissertation, Heberw University, 2001.
    PostScript PDF
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  • A Structural EM Algorithm for Phylogenetic Inference by M. Ninio.
    M.Sc. dissertation, Heberw University, 2001.
    PostScript PDF
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