Nir Friedman Nir Friedman

Nir Friedman

Professor
The Rachel and Selim Benin School of Computer Science and Engineering
The Alexander Silberman Institute of Life Sciences
The Hebrew University of Jerusalem
Jerusalem 9190401
Israel
+972-2-549-4557 (Office)

+972-2-549-4662 (Admin)
+972-2-658-4295 (Lab)

nir.friedman@mail.huji.ac.il

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Disserations Under My Supervision

2014

  • The Complexity and Dynamics of Histone Modifications In the Yeast Stress Response by A. Appleboim.
    M.Sc. dissertation, Hebrew University, 2014.
    PDF
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2013

  • Establishing a Robotic High-Throughput Measurement System for Dissection of Transcritional Networks in Yeast by J. Gutin.
    M.Sc. dissertation, Hebrew University, 2013.
    PDF
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2012

  • Computational Comparative Study of Transcriptional Regulation in Eukaryotes by N. Habib.
    Ph.D. dissertation, Hebrew University, 2012.
    PDF
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  • Characterizing Transcriptomes from High-Throughput Data by M. Yassour.
    Ph.D. dissertation, Hebrew University, 2012.
    PDF
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2011

  • A Systematic Experiment for Studying the Role of Chromatin Remodelers in Transcription Regulation by A. Klein.
    M.Sc. dissertation, Hebrew University, 2011.
    PDF
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  • Transcription Regulation Models and Their Applications to Human Disease Research by N. Novershtern.
    Ph.D. dissertation, Hebrew University, 2011.
    PDF
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2010

  • Reasoning about Structured Stochastic Systems in Continuous-Time by T. El-Hay.
    Ph.D. dissertation, Hebrew University, 2010.
    PDF
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  • Understanding Protein-Protein Interaction Networks by A. Jaimovich.
    Ph.D. dissertation, Hebrew University, 2010.
    PDF
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  • Histone Modifications in Transcriptional Regulation by A. Novogrodski.
    M.Sc. dissertation, Hebrew University, 2010.
    PDF
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  • Exploring Transcription Regulation through Cell-to-cell Variability by R. Rinott.
    M.Sc. dissertation, Hebrew University, 2010.
    PDF
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2009

  • Mean Field Variational Approximation for Continuous-Time Bayesian Networks by I. Cohn.
    M.Sc. dissertation, Hebrew University, 2009.
    PDF
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2008

  • From DNA Sequence to Chromatin Dynamics: Computational Analysis of Transcriptional Regulation by T. Kaplan.
    Ph.D. dissertation, Hebrew University, 2008.
    PDF
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  • Modeling Evolution Using Probabilistic Models by M. Ninio.
    Ph.D. dissertation, Hebrew University, 2008.
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2007

  • Analysis of DNA Motifs Based on a Novel Motif Comparison Method by N. Habib.
    M.Sc. dissertation, Hebrew University, 2007.
    PDF
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  • Learning Symmetric Relational Markov Random Fields by O. Meshi.
    M.Sc. dissertation, Hebrew University, 2007.
    PDF
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  • Nucleosome Positioning from Tiling Microarray Data by M. Yassour.
    M.Sc. dissertation, Hebrew University, 2007.
    PDF
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2005

  • Unified Models for Regulatory Mechanisms by Y. Barash.
    Ph.D. dissertation, Hebrew University, 2005.
    PDF
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  • Learning Hidden Variables in Probabilistic Graphical Models by G. Elidan.
    Ph.D. dissertation, Hebrew University, 2005.
    PDF
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2004

  • Toward an Integrated Protein-Protein Interaction Map by A. Jaimovich.
    M.Sc. dissertation, Hebrew University, 2004.
    PDF
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  • Probabilistic Modeling of Gene Regulatory Networks From Data by I. Nachman.
    Ph.D. dissertation, Hebrew University, 2004.
    PDF
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  • Discriminative Learning of Composite Transcriptional Regulatory Networks by T. Naveh.
    M.Sc. dissertation, Hebrew University, 2004.
    PostScript PDF
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  • Computational Aspects in Gene Expression Analysis by N. Shefi.
    M.Sc. dissertation, Hebrew University, 2004.
    PDF
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2003

  • From Gene Expression to Molecular Pathways by D. Pe'er.
    Ph.D. dissertation, Hebrew University, 2003.
    PostScript PDF
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2001

  • Efficient Methods for Exact and Approximate Inference in Graphical Models by T. El-Hay.
    M.Sc. dissertation, Hebrew University, 2001.
    PostScript PDF
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  • A Structural EM Algorithm for Phylogenetic Inference by M. Ninio.
    M.Sc. dissertation, Hebrew University, 2001.
    PostScript PDF
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