Nir Friedman

Nir Friedman

Professor
The Rachel and Selim Benin School of Computer Science and Engineering
The Alexander Silberman Institute of Life Sciences
The Hebrew University of Jerusalem
Jerusalem 9190401
Israel
+972-2-549-4557 (Office)

+972-2-549-4662 (Admin)
+972-2-658-4295 (Lab)

nir.friedman@mail.huji.ac.il

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External

Publications



Reconstructing Regulatory Networks

2017

2016

2015

2014

2012

2011

2008

2006

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2000


Epigenetics and the role of chromatin in regulation

2017

2016

2015

2014

2012

2011

2010

2008

2007

2005


Genetic Interactions


Computational Analysis of Gene Expression Data

2013

  • De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis with B.J. Haas, A. Papanicolaou, M. Yassour, M.G. Grabherr, P.D. Blood, J. Bowden, M.B. Couger, D. Eccles, B. Li, M. Lieber, MD. Macmanes, M. Ott, J. Orvis, N. Pochet, F. Strozzi, N. Weeks, R. Westerman, T. William, C.N. Dewey, R. Henschel, R.D. Leduc, and A. Regev.
    Nature Protocols 8(8):1494-512, 2013.
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2012

2011

2010

2009

2008

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2004

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2000


Phylogentic Inference

2012

2011

  • Comparative functional genomics of the fission yeasts with N. Rhind, Z. Chen, M. Yassour, DA. Thompson, BJ. Haas, N. Habib, I. Wapinski, S. Roy, MF. Lin, DI. Heiman, SK. Young, K. Furuya, Y. Guo, A. Pidoux, HM. Chen, B. Robbertse, JM. Goldberg, K. Aoki, EH. Bayne, AM. Berlin, CA. Desjardins, E. Dobbs, L. Dukaj, L. Fan, MG. Fitzgerald, C. French, S. Gujja, K. Hansen, D. Keifenheim, JZ. Levin, RA. Mosher, CA. Muller, J. Pfiffner, M. Priest, C. Russ, A. Smialowska, P. Swoboda, SM. Sykes, M. Vaughn, S. Vengrova, R. Yoder, Q. Zeng, R. Allshire, D. Baulcombe, BW. Birren, W. Brown, K. Ekwall, M. Kellis, J. Leatherwood, H. Levin, H. Margalit, R. Martienssen, CA. Nieduszynski, JW. Spatafora, JZ. Dalgaard, P. Baumann, H. Niki, A. Regev, and C. Nusbaum.
    Science, 2011.
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2009

2007

2005

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2001


Representation and Inference in Probablistic Graphical Models

2010

2009

2008

2007

2006

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1998

1996


Learning Probablistic Graphical Models

2009

2007

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1996


Machine Learning

2010

2009

2008

2006

2004

2002

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1996


Belief Change and Nonmonotonic Reasoning

2001

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1999

1998

1997

1996

1995

1994

1992

  • On the power and complexity of knowledge-charts
    Master's Thesis, Weizmann Institute of Science, 1992.
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