Nir Friedman



	Nir Friedman
	Professor
	School of Computer Science and Engineering Alexander Silberman Institute of Life Sciences The Hebrew University of Jerusalem Jerusalem 91904 Israel				+972-2-549-4557 (Office) +972-2-658-4707 (Admin) +972-2-658-4295 (Wet Lab) nir@cs.huji.ac.il

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Publications

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Collaborations

Tools and Resources

SEMPHY: Structural EM Phylogenetic Reconstruction
- A tool for data-intensive phylogenetic reconstruction
ScoreGenes: Statistical Analysis of Gene Expression Patterns
- A data analysis toolkit designed for large sets of gene expression profiles
GeneXPress: Visualization and Interpretation of Gene Expression Patterns
- A visualization and analysis tool for gene expression data, integrating clustering, gene annotation, and sequence information
LibB: Learning Bayesian Networks
- A a tool for learning Bayesian network learning
Predicting Zinc Finger Binding Preferences
- Ab initio prediction of binding preferences based on protein sequence
SNAP: A Discriminative Motif Discovery & Analysis Tool
Modeling Dependencies in Protein-DNA Binding Sites
The Bayesian Network Repository
- A repository of Bayesian networks
BLiC - A Novel Bayesian DNA Motif Comparison Method for Clustering and Retrieval